PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400038147
Common NameLOC102605761, WRKY6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 497aa    MW: 55212.9 Da    PI: 7.5015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400038147genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30262320259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  PGSC0003DMP400038147 262 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILNTTYEGTHNHP 320
                           7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-33246322IPR003657WRKY domain
SuperFamilySSF1182901.83E-27254322IPR003657WRKY domain
PROSITE profilePS5081128.793256322IPR003657WRKY domain
SMARTSM007747.4E-36261321IPR003657WRKY domain
PfamPF031062.0E-26263320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDKGWGLTLE NKPFFGFNHM MNRREEQLVA DHDKKEVDFF SHHNRKPIHH DFIKKEDSNT  60
TTITTPSEFI VNTGLQLVTA SDQSTVDDGI SSEIILEEER AKNELAQLQV ELRRMNAENQ  120
RLRGMLTQVT NNYTALQMHL ATLMQQQQQQ QISTTQNTHD QIVEAKFDQE KIVPGRFLEL  180
GRSDNDLSHN SHSSSEERTV SKSPRNDTQV TRHNKAGREE SPESESWVPN KVPKLNSSMP  240
TDATMRKARV SVRARSEAPM ISDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ  300
RCAEDRTILN TTYEGTHNHP LPPAAMAMAS TTSAAANMLL SGSMSSADGT LMNPNFLART  360
MLPCSSSMAT ISASAPFPTI TLDLTQNQNS LTYNQTSTPI SQFQIPFQSS PQHPNFITSM  420
PPPPPMPQVL HNQSKFSGLQ ISQDIHQPQQ LQHVQNHRSF SDTLTAATAA ITADPNFTAA  480
LAAAISSIIT GPGKEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-21252322877Probable WRKY transcription factor 4
2lex_A5e-21252322877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2802630.0KF280263.1 Solanum tuberosum WRKY transcription factor (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350473.10.0PREDICTED: WRKY transcription factor 6-like
SwissprotQ9C5191e-144WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM1BZU70.0M1BZU7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000567250.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-111WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]